PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976361.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

E2F/DP

Protein Properties

Length: 384aa MW: 43303.1 Da PI: 7.7198

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	70.6	1.8e-22	24	89	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+++ ++v l+e+a +L v +rRRiYDi+NVLe+++++ +k+kn + wkg XP_024976361.1 24 RKQKSLGLLCSNFLSLYNRDGVETVGLDEAAARL---GV--ERRRIYDIVNVLESVGVLVRKAKNTYYWKG 89 79***************999********.....****************************98 PP
2	E2F_TDP	73.6	2.2e-23	156	236	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+llt++flkl+ ++++++++l+++ak L+ + +++k+RR+YDi+NVL+++n iek ++k+++rw g XP_024976361.1 156 RKEKSLGLLTKNFLKLFLCTTSDMLSLEDAAKILLGDarnpsLTRTKVRRLYDIANVLSSMNFIEKihhpeTRKPAFRWLG 236 79*************************************98889*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MALPLPSPSL PAKESASGST TYCRKQKSLG LLCSNFLSLY NRDGVETVGL DEAAARLGVE 60 RRRIYDIVNV LESVGVLVRK AKNTYYWKGM GAIPKALEQL KEEGFRNNDE TIDCKSGKIS 120 DDDEDERFSN HSASFQDKVD LDSMHKVPGS FKSENRKEKS LGLLTKNFLK LFLCTTSDML 180 SLEDAAKILL GDARNPSLTR TKVRRLYDIA NVLSSMNFIE KIHHPETRKP AFRWLGMRGR 240 TDSETGTSNA LVHKESKKRT FGTELTNICF KRNKLVSPID VGINEDIKPL DPQGGSQPVK 300 CNTDRCNSDQ VPEQFGPSVP PICLPKSCDE ESNEVKKSHD WESLASTYRP QYHNQALRDL 360 FVHYMDAWKS WYSEVAEMDP IQVI

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MALPLPSPSL PAKESASGST TYCRKQKSLG LLCSNFLSLY NRDGVETVGL DEAAARLGVE  60
RRRIYDIVNV LESVGVLVRK AKNTYYWKGM GAIPKALEQL KEEGFRNNDE TIDCKSGKIS  120
DDDEDERFSN HSASFQDKVD LDSMHKVPGS FKSENRKEKS LGLLTKNFLK LFLCTTSDML  180
SLEDAAKILL GDARNPSLTR TKVRRLYDIA NVLSSMNFIE KIHHPETRKP AFRWLGMRGR  240
TDSETGTSNA LVHKESKKRT FGTELTNICF KRNKLVSPID VGINEDIKPL DPQGGSQPVK  300
CNTDRCNSDQ VPEQFGPSVP PICLPKSCDE ESNEVKKSHD WESLASTYRP QYHNQALRDL  360
FVHYMDAWKS WYSEVAEMDP IQVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-111	E2F/DP family protein