PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976373.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26209.8 Da    PI: 5.5418
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.84.5e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g+lKKAeEL vLCda+va++ifs tgkl+ey+s
  XP_024976373.1 10 KIDNITARQVTFSKRRRGLLKKAEELAVLCDADVALVIFSATGKLFEYAS 59
                    69**********************************************86 PP
2K-box462.2e-16961722399
           K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ ke+    re+ +l GedL+ L+l+eLq+Le+ Le +l+++ ++K+e + ++i +lq+k  +l eenk L+++++
  XP_024976373.1  96 RMGKEVVDRNRELSRLRGEDLNGLTLEELQRLENLLEGGLNRVLQTKDERIANEIANLQQKGFQLMEENKLLKQQMM 172
                     555666666788999***********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MAREKIKIRK IDNITARQVT FSKRRRGLLK KAEELAVLCD ADVALVIFSA TGKLFEYASS  60
SMQELLGKYK LHSTNNVDKV GEPSLNLQLV ESDDSRMGKE VVDRNRELSR LRGEDLNGLT  120
LEELQRLENL LEGGLNRVLQ TKDERIANEI ANLQQKGFQL MEENKLLKQQ MMTLISKGKR  180
PRATAAELEN SVINLEDQGQ SSESVATNVY SCNSGPPPED DCSDTSLKLA LPFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-72MIKC_MADS family protein