PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976376.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27802.8 Da    PI: 8.67
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976376.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl eys+
  XP_024976376.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLCEYST 59
                    79***********************************************96 PP
2K-box88.81e-29851769100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       ++++ +   e+ k+k++ie Lq++qRhl+GedL+sLslkeLq+Leqq++ +l++ R +Kn+l+l++i++lqkk k+lq++n+ L+++++e
  XP_024976376.1  85 DPQSQTLEIISEHGKMKARIELLQKTQRHLMGEDLDSLSLKELQNLEQQIDMALRRLRLRKNHLMLQSISNLQKKDKALQDQNNVLSQEIKE 176
                     455666677899*****************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGRGRVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLCEYSTD  60
ASRMERILER YERHLYVERQ LNADDPQSQT LEIISEHGKM KARIELLQKT QRHLMGEDLD  120
SLSLKELQNL EQQIDMALRR LRLRKNHLML QSISNLQKKD KALQDQNNVL SQEIKEKEIE  180
QSQSPPVEQQ THENMSSFQL GTLNLGEIYG AGGEEGEIME ETQRGKSVMP HWMLQYMRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RRLRLRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-80MIKC_MADS family protein