PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976378.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27646.6 Da    PI: 8.2379
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl eys+
  XP_024976378.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLCEYST 59
                    79***********************************************96 PP
2K-box88.81e-29841759100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       ++++ +   e+ k+k++ie Lq++qRhl+GedL+sLslkeLq+Leqq++ +l++ R +Kn+l+l++i++lqkk k+lq++n+ L+++++e
  XP_024976378.1  84 DPQSQTLEIISEHGKMKARIELLQKTQRHLMGEDLDSLSLKELQNLEQQIDMALRRLRLRKNHLMLQSISNLQKKDKALQDQNNVLSQEIKE 175
                     455666677899*****************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MGRGRVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLCEYSTD  60
ASMERILERY ERHLYVERQL NADDPQSQTL EIISEHGKMK ARIELLQKTQ RHLMGEDLDS  120
LSLKELQNLE QQIDMALRRL RLRKNHLMLQ SISNLQKKDK ALQDQNNVLS QEIKEKEIEQ  180
SQSPPVEQQT HENMSSFQLG TLNLGEIYGA GGEEGEIMEE TQRGKSVMPH WMLQYMRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144RRLRLRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-82MIKC_MADS family protein