PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976425.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26969.9 Da    PI: 9.3673
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.2e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++nrqvt+skRrng++KKA+EL vLCda+v++i++s t+kl+ey+s
  XP_024976425.1  9 KKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYIS 59
                    68***********************************************86 PP
2K-box775e-2671169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+sg +l++++++++q+el++ k+ ++nL++++R++lG++Le+L ++eL  Le++ ++++  iR++K +++ +++e+++kk +++q+  k+L 
  XP_024976425.1  71 YQKASGIDLWNSHYQKMQEELRQQKEVNRNLRKQIRQRLGDCLEDLGFEELFALEKDSQEAVYIIRERKLKVIGNKVETSKKKVRSAQDVYKKLM 165
                     899*******************************************************************************************9 PP

           K-box  96 kkle 99 
                     ++++
  XP_024976425.1 166 HEFD 169
                     9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MARGKIQIKK IENSTNRQVT YSKRRNGLFK KASELTVLCD AKVSIIMVSC TDKLHEYISP  60
SITMKQFFDQ YQKASGIDLW NSHYQKMQEE LRQQKEVNRN LRKQIRQRLG DCLEDLGFEE  120
LFALEKDSQE AVYIIRERKL KVIGNKVETS KKKVRSAQDV YKKLMHEFDI RGEDPQYGMI  180
EDGRDYENIY AYPQMGAPHM LTLRLQPDHQ NNLHVVTAGT TASDLTTYGL LG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-87MIKC_MADS family protein