PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976524.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 490aa MW: 54669.6 Da PI: 7.2516

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.2e-17	163	212	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_024976524.1 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 212 78*****************......55**********************997 PP
2	AP2	43	1.2e-13	255	305	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_024976524.1 255 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 305 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MWDLNGSPDR RKYHDDQERC SSPVVEKEEY DDNNKGKGVG GSVSNSSSSV KVFDQDDGSD 60 EDDQDSDKGG FKKRTTTGDS RLFGFSMTDN SSWDYNPPVT HQFFPLDDSE VGSTTSVGEM 120 KFCHQSSEQP PFRAVVAGGY LGKVTDIPQP LKKSRRGPRS RSSQYRGVTF YRRTGRWESH 180 IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFT LHDYEEDLKQ TNNLTKEEFV 240 HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEV EAARAYDKAA 300 IKCNGKDAVT NFDSRTYENE LHSSDSKTSS DHNLDLSLGG SSSSNEPRSI KFGDNHQIPS 360 SHDHSKAIQF DFSRPPASGW GWYDGRKNES YNEMETVEVL SQTHLHSNSP TTGSLMGNNG 420 YGHFVRPSHP TMLHRFNSAP INSLTHQLSA HGGGSDSSGQ YYQMHANSNS NSGAASSGFP 480 HQRFPIRPPP

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MWDLNGSPDR RKYHDDQERC SSPVVEKEEY DDNNKGKGVG GSVSNSSSSV KVFDQDDGSD  60
EDDQDSDKGG FKKRTTTGDS RLFGFSMTDN SSWDYNPPVT HQFFPLDDSE VGSTTSVGEM  120
KFCHQSSEQP PFRAVVAGGY LGKVTDIPQP LKKSRRGPRS RSSQYRGVTF YRRTGRWESH  180
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFT LHDYEEDLKQ TNNLTKEEFV  240
HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEV EAARAYDKAA  300
IKCNGKDAVT NFDSRTYENE LHSSDSKTSS DHNLDLSLGG SSSSNEPRSI KFGDNHQIPS  360
SHDHSKAIQF DFSRPPASGW GWYDGRKNES YNEMETVEVL SQTHLHSNSP TTGSLMGNNG  420
YGHFVRPSHP TMLHRFNSAP INSLTHQLSA HGGGSDSSGQ YYQMHANSNS NSGAASSGFP  480
HQRFPIRPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-103	AP2 family protein