PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976545.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YB
Protein Properties Length: 166aa    MW: 17989 Da    PI: 6.5164
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.63.6e-5828124298
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrflPian+srimkk+lPan+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy++plk+yl++yreleg+
  XP_024976545.1  28 REQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLSRYRELEGD 122
                     89********************************************************************************************9 PP

           NF-YB  97 kk 98 
                     +k
  XP_024976545.1 123 TK 124
                     75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MADGPGSPAG GSHESGGEQS PHSNSNIREQ DRFLPIANIS RIMKKALPAN GKIAKDAKDT  60
VQECVSEFIS FVTSEASDKC QKEKRKTING DDLLWAMATL GFEDYIDPLK AYLSRYRELE  120
GDTKGSARGG DGSGKKDTMG PQLVPNAQFP HQGPYTQGMN FLNSHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.14e-82NF-YB family protein