PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976571.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 872aa    MW: 96388.7 Da    PI: 5.4957
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.22e-25146247199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ltpsd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv+a++Lk+gD v+F   ++++
  XP_024976571.1 146 FCKTLTPSDTSTHGGFSVPRRAAEKLfpqldfSMQPPT-QELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVSAKRLKQGDAVLFI--RDEK 237
                     99*********************999*****9555544.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r+
  XP_024976571.1 238 SQLLLGVRRA 247
                     7789999997 PP
2Auxin_resp111.67.4e-37272355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv+++++++k+++ +++svGmRf m+fet++s +rr++Gt+vg+sd+dp+rWp+SkW +L+
  XP_024976571.1 272 AAHAAANRSPFTIFYNPRACPSEFVIPLARFRKSVYgTQLSVGMRFGMMFETDESGKRRYMGTIVGISDVDPLRWPGSKWHNLQ 355
                     79**********************************9********************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    
MTTIEEKLNS TGVNSGTHSL LEEMKLLKEM QDHSVIKKPI NSELWHACAG PLVSLPQVGS  60
LVYYFPQGHS EQVAVSTNRT ATSQVPNYPN LPSQLLCQVL NATLHADKET DEIYAQMSLR  120
PVNSEKDVLP IPDFGMKPSR HPTEFFCKTL TPSDTSTHGG FSVPRRAAEK LFPQLDFSMQ  180
PPTQELIVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVS AKRLKQGDAV LFIRDEKSQL  240
LLGVRRANRQ QTSLPSSVLS ADSMHIGVLA AAAHAAANRS PFTIFYNPRA CPSEFVIPLA  300
RFRKSVYGTQ LSVGMRFGMM FETDESGKRR YMGTIVGISD VDPLRWPGSK WHNLQVEWDE  360
PGCGDKQSRV SPWDIEAPES LFIFPALTSS LKRPFNSAFL GAQTEWDNMV SRPFMRAPET  420
VNGNFSNPSM SSLWSEQLIK MLMKPQNGNN AASISPVHDT FAANRTPLQS ENRPQFHLIQ  480
PNTTTNTANV TSISPPQSST NLLGNQQPQQ KPTNQTPVSI CSETMKSESM QVTSSKPINS  540
PQNLVHELPF LNQLSPFDSS ILHAQQFDSP QIDSSSLNGL FPYPDTNVLN PYPSLGQETW  600
DSHVNNNSKC FFQPNTGPSN VYGFKDLSDE SHHNSQSVNA YNCLNFEGSN GGSTVVDPSV  660
SSTVLDEFCN LKDIEFQNPS NYLVSNNFSS SQDVQSQITS ASLVDSQAYS VQELPDNSGG  720
ASSSNGEFDD SGLLTNNSWQ QVAAPPRVRT YTKIQKAGSV GRSIDVSSFK NYDELCSEIE  780
KMFGLEGLLN DSRGSGWKLV YVDFENDVLL VGDDPWEEFV GCVRCIRILS PSEVQQMGEE  840
GMQLLNSNAA LQAGINGGPL SDNGARTWVG PT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein