PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976597.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 346aa MW: 38702.9 Da PI: 7.5375

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++++ G+g+W++++ g+ R+ k+c++rw +yl XP_024976597.1 14 KGPWTPEEDIILVSYIQENGPGNWRSVPTSTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.1	1.3e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_024976597.1 67 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ ENGPGNWRSV PTSTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLSKIQ 120 GNSSNQENHH PSRGSNSSSS SETTMSKGQW ERRLQTDIHM AKQALCDALS LDNKSVNLPQ 180 LSSSTFSRKP SSSIGTNPSA KIEQELVLPP PQTNQSTITY ASSTENIARL LPNWMKKKQK 240 SSQTSSESTQ TRNSFDGQFP SPPSEGFDNS LQFGLHNYSN ISEVSQSVSP ETSLFQDESN 300 PSANTDNAQL PPLSFLEKWL LDDANAQEHD QDNLMNLSLE ESNGLF

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ ENGPGNWRSV PTSTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLSKIQ  120
GNSSNQENHH PSRGSNSSSS SETTMSKGQW ERRLQTDIHM AKQALCDALS LDNKSVNLPQ  180
LSSSTFSRKP SSSIGTNPSA KIEQELVLPP PQTNQSTITY ASSTENIARL LPNWMKKKQK  240
SSQTSSESTQ TRNSFDGQFP SPPSEGFDNS LQFGLHNYSN ISEVSQSVSP ETSLFQDESN  300
PSANTDNAQL PPLSFLEKWL LDDANAQEHD QDNLMNLSLE ESNGLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	1e-104	MYB family protein