PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976766.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family YABBY
Protein Properties Length: 158aa    MW: 17623 Da    PI: 8.7146
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY199.31.6e-6151516170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     s e+vCyv+CnfCntilavsvP +s++++vtvrCGhC++lls+n++   q+++ +++              +++++l+sn+ k +   +  ss  
  XP_024976766.1   5 SFERVCYVHCNFCNTILAVSVPCSSMSSIVTVRCGHCANLLSLNISALLQTTTHHHN--------------HHQKQLSSNNDKAQFGGSGSSS-- 83 
                     669*****************************************9988776655443..............2222222222222222222222.. PP

           YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     l ++ + +vp+  p+i PPekrqrvPsaynrfikeei+rikasnP+ishreafs+aaknWahfP+ihfgl
  XP_024976766.1  84 L-QSVEPQVPQ-TPAICPPEKRQRVPSAYNRFIKEEIKRIKASNPEISHREAFSMAAKNWAHFPHIHFGL 151
                     1.233456776.5679****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MSLESFERVC YVHCNFCNTI LAVSVPCSSM SSIVTVRCGH CANLLSLNIS ALLQTTTHHH  60
NHHQKQLSSN NDKAQFGGSG SSSLQSVEPQ VPQTPAICPP EKRQRVPSAY NRFIKEEIKR  120
IKASNPEISH REAFSMAAKN WAHFPHIHFG LKLDETSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-54YABBY family protein