PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976807.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 236aa    MW: 26655.8 Da    PI: 9.0238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.81.9e-31141481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                     lppG++F P++eelv++yL+ k +g++l   + i+e+d+y++eP dLp         ++++k+wy F+   + ++   +k+r +  g+Wk +g+ 
  XP_024976807.1  14 LPPGCQFFPSEEELVCHYLALKNSGDHLGS-NLIEEIDLYRFEPFDLPGracflfGREGKRKHWYCFAAMPRVKRGRGEKRR-AGGGIWKRSGSV 106
                     79*************************999.89***************44777764445778*******9998765555555.689********* PP

             NAM  90 kevlsk..kgelvglkktLvfykgrapk.gektdWvmheyrl 128
                     k+++ +  +g + g++kt+vfy g++pk +++t+W+m ey+l
  XP_024976807.1 107 KDIVGAgvQGVVLGTRKTFVFYLGDSPKtAVRTKWIMYEYAL 148
                     ****98778888**********997766167*********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MDDSMNPNPA FLPLPPGCQF FPSEEELVCH YLALKNSGDH LGSNLIEEID LYRFEPFDLP  60
GRACFLFGRE GKRKHWYCFA AMPRVKRGRG EKRRAGGGIW KRSGSVKDIV GAGVQGVVLG  120
TRKTFVFYLG DSPKTAVRTK WIMYEYALVD QKMAEASYVL CRVFAKSHHR SNTPSDVLKS  180
CGENVKTVRH IGIQCDDALI SESGMVKFMG NQKSLSDFLV YWNADFLLMN LWKIVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-28NAC family protein