PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976854.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28774.8 Da    PI: 9.3892
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.66e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRr g+lKKA+EL +LCdaev v+ifsstgkl+e+s+
  XP_024976854.1 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLHEFSN 59
                    8***********************************************95 PP
2K-box85.51.1e-2880170999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        ++   +q+e+a Lk++++nLq+++R+++Ge+L+ Ls+k+Lq++e+qLe sl+ iR kK++ll+e+ieel +k + +q+en +L kk++
  XP_024976854.1  80 SPISEVRFWQREAAMLKQQLKNLQENHRRMMGEELSGLSVKDLQSMENQLEMSLRGIRMKKDQLLFEEIEELNRKGNLIQHENVELCKKVN 170
                     45577899******************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVMIFSS TGKLHEFSNT  60
SMKSVIDRYH KAKEEQQLTS PISEVRFWQR EAAMLKQQLK NLQENHRRMM GEELSGLSVK  120
DLQSMENQLE MSLRGIRMKK DQLLFEEIEE LNRKGNLIQH ENVELCKKVN QIREENVELY  180
NKVYGIRDAD PANRNVFATN ASSIREDPHA PIHLQLSQPD PHEAIEASLR STNLGIDGFN  240
SKGGELIAYQ R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-102MIKC_MADS family protein