PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976856.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 141aa MW: 16284 Da PI: 10.9027

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.1	2.1e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA+EL +LCdaev v+ifsstgkl+e+s+ XP_024976856.1 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLHEFSN 59 8***********************************************95 PP
2	K-box	66	1.4e-22	80	140	9	69
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 ++ +q+e+a Lk++++nLq+++R+++Ge+L+ Ls+k+Lq++e+qLe sl+ iR kK XP_024976856.1 80 SPISEVRFWQREAAMLKQQLKNLQENHRRMMGEELSGLSVKDLQSMENQLEMSLRGIRMKK 140 45677899****************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVMIFSS TGKLHEFSNT 60 SMKSVIDRYH KAKEEQQLTS PISEVRFWQR EAAMLKQQLK NLQENHRRMM GEELSGLSVK 120 DLQSMENQLE MSLRGIRMKK V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-77	MIKC_MADS family protein