PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976877.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

M-type_MADS

Protein Properties

Length: 401aa MW: 45710 Da PI: 7.5413

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.5	1e-24	44	88	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en snrqvtfskRrngilKKA+ELSvLCd+++ +++fs+tgk XP_024976877.1 44 KRLENISNRQVTFSKRRNGILKKAKELSVLCDIDIILLMFSPTGK 88 689*****************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MYLCVSIQTY DNFLTSIRFY RSLVTIARSA IAAELMGRVK LKIKRLENIS NRQVTFSKRR 60 NGILKKAKEL SVLCDIDIIL LMFSPTGKPT LFTGQRSNID EVIAKFARLT PQERAKRKLE 120 SLEALKKTFK KLDHDVNIQD FAGASSQSAE DLSNHAMMLR SQLADIHKRL SYWSNPDKID 180 NIEHLKQMED SLRESLDRIR IHKENFGQQK LIPLDCMSQF QNGLHLPLMM ANTQEDQNLP 240 WHPNNENQNL ILPEKQNYMP HRDGECSGMS ITNYSGLFGA GKQLEMDGAG KVDCTRQDGG 300 LAELCSTSNL RPQLSEQFPF HPYGNLNFQQ SKEVKPETAT SLHGFLDYSM NCNFEMPRPV 360 YNDNVCHAWN PDPGPCPLPM IDGNSYSQSP QPDHLMTNNQ N

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MYLCVSIQTY DNFLTSIRFY RSLVTIARSA IAAELMGRVK LKIKRLENIS NRQVTFSKRR  60
NGILKKAKEL SVLCDIDIIL LMFSPTGKPT LFTGQRSNID EVIAKFARLT PQERAKRKLE  120
SLEALKKTFK KLDHDVNIQD FAGASSQSAE DLSNHAMMLR SQLADIHKRL SYWSNPDKID  180
NIEHLKQMED SLRESLDRIR IHKENFGQQK LIPLDCMSQF QNGLHLPLMM ANTQEDQNLP  240
WHPNNENQNL ILPEKQNYMP HRDGECSGMS ITNYSGLFGA GKQLEMDGAG KVDCTRQDGG  300
LAELCSTSNL RPQLSEQFPF HPYGNLNFQQ SKEVKPETAT SLHGFLDYSM NCNFEMPRPV  360
YNDNVCHAWN PDPGPCPLPM IDGNSYSQSP QPDHLMTNNQ N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	5e-99	M-type_MADS family protein