PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976881.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

M-type_MADS

Protein Properties

Length: 366aa MW: 41697.3 Da PI: 7.3275

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.6	8.8e-25	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en snrqvtfskRrngilKKA+ELSvLCd+++ +++fs+tgk XP_024976881.1 9 KRLENISNRQVTFSKRRNGILKKAKELSVLCDIDIILLMFSPTGK 53 689*****************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MGRVKLKIKR LENISNRQVT FSKRRNGILK KAKELSVLCD IDIILLMFSP TGKPTLFTGQ 60 RSNIDEVIAK FARLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFAGAS SQSAEDLSNH 120 AMMLRSQLAD IHKRLSYWSN PDKIDNIEHL KQMEDSLRES LDRIRIHKEN FGQQKLIPLD 180 CMSQFQNGLH LPLMMANTQE DQNLPWHPNN ENQNLILPEK QNYMPHRDGE CSGMSITNYS 240 GLFGAGKQLE MDGAGKVDCT RQDGGLAELC STSNLRPQLS EQFPFHPYGN LNFQQSKEVK 300 PETATSLHGF LDYSMNCNFE MPRPVYNDNV CHAWNPDPGP CPLPMIDGNS YSQSPQPDHL 360 MTNNQN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MGRVKLKIKR LENISNRQVT FSKRRNGILK KAKELSVLCD IDIILLMFSP TGKPTLFTGQ  60
RSNIDEVIAK FARLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFAGAS SQSAEDLSNH  120
AMMLRSQLAD IHKRLSYWSN PDKIDNIEHL KQMEDSLRES LDRIRIHKEN FGQQKLIPLD  180
CMSQFQNGLH LPLMMANTQE DQNLPWHPNN ENQNLILPEK QNYMPHRDGE CSGMSITNYS  240
GLFGAGKQLE MDGAGKVDCT RQDGGLAELC STSNLRPQLS EQFPFHPYGN LNFQQSKEVK  300
PETATSLHGF LDYSMNCNFE MPRPVYNDNV CHAWNPDPGP CPLPMIDGNS YSQSPQPDHL  360
MTNNQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-99	M-type_MADS family protein