PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976908.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 232aa MW: 26514.6 Da PI: 10.5656

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.8	1.8e-20	9	51	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 krien ++r+ tfs+R ng+lKKA+ELS LCdaeva++ifs++ XP_024976908.1 9 KRIENATKREETFSRRTNGLLKKAFELSLLCDAEVALLIFSPS 51 79***************************************86 PP
2	K-box	67.7	3.9e-23	85	172	12	99
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e ++ e++ +k+ +e L+++++h+ G+dL++L +k+Lq+Le+qL ++ ++RskK +ll e+i+ l++ k++qe+n+ L+kkl+ XP_024976908.1 85 RTFEVWKDEMEEMKRMLEALETKHKHFAGDDLSTLGMKDLQKLERQLRIGVDRVRSKKRRLLSEHISLLKRNLKSMQEKNTLLNKKLK 172 56688********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MGRGKVEVKR IENATKREET FSRRTNGLLK KAFELSLLCD AEVALLIFSP SSPKPHLFSS 60 HGMDRTMIRY RREKGSGTTN NSGIRTFEVW KDEMEEMKRM LEALETKHKH FAGDDLSTLG 120 MKDLQKLERQ LRIGVDRVRS KKRRLLSEHI SLLKRNLKSM QEKNTLLNKK LKDGIDGNSS 180 LDHDIQSLKI AGGRPTIVFV SEKSLEYDLK CNSTKKPNVN LSFVYGLTFG SN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	172	KKRRLLSEHISLLKRNLKSMQEKNTLLNKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	4e-40	MIKC_MADS family protein