PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976909.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25915.9 Da    PI: 10.405
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.7e-20951143
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    krien ++r+ tfs+R ng+lKKA+ELS LCdaeva++ifs++
  XP_024976909.1  9 KRIENATKREETFSRRTNGLLKKAFELSLLCDAEVALLIFSPS 51
                    79***************************************86 PP
2K-box454.7e-16851671299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ e ++ e++ +k+ +e L+++++h+ G+dL++L +k+Lq+Le+qL  ++ +      +ll e+i+ l++  k++qe+n+ L+kkl+
  XP_024976909.1  85 RTFEVWKDEMEEMKRMLEALETKHKHFAGDDLSTLGMKDLQKLERQLRIGVDR-----RRLLSEHISLLKRNLKSMQEKNTLLNKKLK 167
                     56688******************************************999975.....679************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MGRGKVEVKR IENATKREET FSRRTNGLLK KAFELSLLCD AEVALLIFSP SSPKPHLFSS  60
HGMDRTMIRY RREKGSGTTN NSGIRTFEVW KDEMEEMKRM LEALETKHKH FAGDDLSTLG  120
MKDLQKLERQ LRIGVDRRRL LSEHISLLKR NLKSMQEKNT LLNKKLKDGI DGNSSLDHDI  180
QSLKIAGGRP TIVFVSEKSL EYDLKCNSTK KPNVNLSFVY GLTFGSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-37MIKC_MADS family protein