PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976910.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 218aa MW: 24797.6 Da PI: 10.385

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64	1.6e-20	9	51	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 krien ++r+ tfs+R ng+lKKA+ELS LCdaeva++ifs++ XP_024976910.1 9 KRIENATKREETFSRRTNGLLKKAFELSLLCDAEVALLIFSPS 51 79***************************************86 PP
2	K-box	59.8	1.1e-20	85	172	12	99
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e ++ e++ +k+ +e L+++++h+ G+dL++L +k+Lq+Le+qL ++ ++RskK + + e+ l kk k+ + n +L + ++ XP_024976910.1 85 RTFEVWKDEMEEMKRMLEALETKHKHFAGDDLSTLGMKDLQKLERQLRIGVDRVRSKKLKSMQEKNTLLNKKLKDGIDGNSSLDHDIQ 172 56688**********************************************************************9999999998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MGRGKVEVKR IENATKREET FSRRTNGLLK KAFELSLLCD AEVALLIFSP SSPKPHLFSS 60 HGMDRTMIRY RREKGSGTTN NSGIRTFEVW KDEMEEMKRM LEALETKHKH FAGDDLSTLG 120 MKDLQKLERQ LRIGVDRVRS KKLKSMQEKN TLLNKKLKDG IDGNSSLDHD IQSLKIAGGR 180 PTIVFVSEKS LEYDLKCNST KKPNVNLSFV YGLTFGSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	2e-39	MIKC_MADS family protein