PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976928.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 791aa    MW: 88137 Da    PI: 6.9211
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.4e-23154255199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_024976928.1 154 FCKTLTASDTSTHGGFSVLRRHADEClpqldmS-RQPPTQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 245
                     99****************************963.3334459************************************************..3488 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+v+v+r+
  XP_024976928.1 246 GDLRVGVRRA 255
                     889****996 PP
2Auxin_resp116.42.5e-38280362183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+++F+++Y+Pr+s++eF+v+++++++++k+++s+GmRf m+fe+e+++e+r++Gt+vg+++ dp rWp+SkW++Lk
  XP_024976928.1 280 AWHAIKTGTMFTIYYKPRTSPTEFIVPYDQYMESIKNNYSIGMRFNMRFEGEEAPEQRFTGTIVGIEERDPKRWPESKWKCLK 362
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    
MTSSEVSSKG NRDTFSSSCF SDRNDGAADS RSGLAISGAG KVDADLALYK DLWRACAGPL  60
VTVPRDGELV FYFPQGHIEQ VEASTNQVAE QQMPMYNLPA KILCRVVNVQ LKAEPDTDEV  120
FAQITLMPES NQDENAVKKE PAPPPDSQFR VHSFCKTLTA SDTSTHGGFS VLRRHADECL  180
PQLDMSRQPP TQELVAKDLH GAEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF  240
LRGENGDLRV GVRRAMRQQA NIPSSVISSH SMHLGVLATA WHAIKTGTMF TIYYKPRTSP  300
TEFIVPYDQY MESIKNNYSI GMRFNMRFEG EEAPEQRFTG TIVGIEERDP KRWPESKWKC  360
LKVRWDETST IPRPDRVSPW KIEPALVPPA INPLPVHRQK RPRSSMLPSS PDSSVLTREG  420
SSKIPATDPS PASAFSRVLQ GQELSTLRGT FVDSNESDSC DRPIHWTPSV IDDEKADAVN  480
ASRRGRTGES SFADLLSGFG SNNCSANEFS TPSNEGKFNL HHSNPWPIMP SSLSLSLLGG  540
GMKNGLQDVR YSAFDQYSVH PNQRGGRMPP PLSSYLQMSS SHLSEVMPKS QSVKQNEIMR  600
PKDGNCKIFG VPLAGNTNIS DAAAAAAVGQ VQSQRYLTFD CDQKFEQSKR LKVADHSAVG  660
KEQHLQAKVQ GVSTRSCTKV HKQGIALGRS VDLTKYNNYD ELIGELDELF EFNGELKRPG  720
NRNWLVVYTD DEGDMMLVGD DPWPEFCGMV RKMFIYTREE VQRMNPGTLN DDNSSVAEGM  780
DEKDTRKNEN A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein