PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976962.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 426aa MW: 46090.5 Da PI: 9.2487

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22	4.1e-07	193	215	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cgk F++++nL++H + H XP_024976962.1 193 TCHKCGKQFRNWENLESHHLSkH 215 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MSTVWFSLKK SFHCESDSAD VHDPKPKTHL SAILTRKPSR WGCSRSIANL KDVINGGSKR 60 HSENPVNCSP RSIGSNEFPN PITHEVILNN SKCEIKITGF GGGFHDGIGG SADGSPLVGT 120 LLAPVSGGNS TMQYSKSTTP RRTISSMERG DGNGIGNSVH LGITGAGGKN TVVQKPRMSS 180 ETETNGSAAG GVTCHKCGKQ FRNWENLESH HLSKHAVTEL MEGDSSRKIV EIICRSSWSK 240 SETSSGRIEK VLKVHNMQKT LARFEEYREL VKTKAGILPK KHPRCRADGN ELLRFYGATI 300 SCSLGINGAS SLCISDKCSV CRIIRDGFSA KREVKGGIGV FTTSTSIRAF ESIEVLEESP 360 DTRKALIVCR VIAGRVHRPL EDIQEMAGQS GFDSLAGKVG LYSNIEELYL LSPKALLPCF 420 VVICKP

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MSTVWFSLKK SFHCESDSAD VHDPKPKTHL SAILTRKPSR WGCSRSIANL KDVINGGSKR  60
HSENPVNCSP RSIGSNEFPN PITHEVILNN SKCEIKITGF GGGFHDGIGG SADGSPLVGT  120
LLAPVSGGNS TMQYSKSTTP RRTISSMERG DGNGIGNSVH LGITGAGGKN TVVQKPRMSS  180
ETETNGSAAG GVTCHKCGKQ FRNWENLESH HLSKHAVTEL MEGDSSRKIV EIICRSSWSK  240
SETSSGRIEK VLKVHNMQKT LARFEEYREL VKTKAGILPK KHPRCRADGN ELLRFYGATI  300
SCSLGINGAS SLCISDKCSV CRIIRDGFSA KREVKGGIGV FTTSTSIRAF ESIEVLEESP  360
DTRKALIVCR VIAGRVHRPL EDIQEMAGQS GFDSLAGKVG LYSNIEELYL LSPKALLPCF  420
VVICKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-158	C2H2 family protein