PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976974.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 563aa MW: 61753.4 Da PI: 7.9159

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	4e-30	222	281	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ +d +++++tYeg+Hnh+ XP_024976974.1 222 MNDGCQWRKYGQKIAKGNPCPRAYYRCTISpTCPVRKQVQRCPQDMSILITTYEGTHNHP 281 58************************999**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MEVDLQRKNT SQIKKEDKGD SNRHRGEEDD SKQEVVIPKD EKQFELTKAE MGEVREENQR 60 LRLHLDQIMK DYQTLQKKFQ DILHQQQLET STTVATATKP NEQPRINDES DLVSLSLGRT 120 SSPELVKKDK RCTTPPTKSS EGLGLGLEYC KFELSSTTQA ESSINPSPDN SLEETKDEAG 180 ETWTPQKPPT PKRSGDDQEV SQQNPTKKTR VSVRVRCDTP TMNDGCQWRK YGQKIAKGNP 240 CPRAYYRCTI SPTCPVRKQV QRCPQDMSIL ITTYEGTHNH PLPVSATAMA STTSAAASML 300 TSGSSTSGSN SNPNPSISSH GLNFYLNENL KLKPIYLPHS SISPSPSCPT VTLDLTSNTL 360 STSSPYNYRT PPMANTFPPR YSTTNLNFSS LDSNPLPISW SNGTLNYGKN QMGSLNFGST 420 QAQENIYHSY IQNKSMMAPT ATSNQHSLQP DTIEAATRAI TSDPNFQSVL QAALTSIIGG 480 VGIGVQGEGE KSGQNVKLED TFPVFSSFPS TSNANKCSSS FFNKSTAATT TTMNKQAPGS 540 NSLPFSSSRS KSTSPENSRD HVV

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MEVDLQRKNT SQIKKEDKGD SNRHRGEEDD SKQEVVIPKD EKQFELTKAE MGEVREENQR  60
LRLHLDQIMK DYQTLQKKFQ DILHQQQLET STTVATATKP NEQPRINDES DLVSLSLGRT  120
SSPELVKKDK RCTTPPTKSS EGLGLGLEYC KFELSSTTQA ESSINPSPDN SLEETKDEAG  180
ETWTPQKPPT PKRSGDDQEV SQQNPTKKTR VSVRVRCDTP TMNDGCQWRK YGQKIAKGNP  240
CPRAYYRCTI SPTCPVRKQV QRCPQDMSIL ITTYEGTHNH PLPVSATAMA STTSAAASML  300
TSGSSTSGSN SNPNPSISSH GLNFYLNENL KLKPIYLPHS SISPSPSCPT VTLDLTSNTL  360
STSSPYNYRT PPMANTFPPR YSTTNLNFSS LDSNPLPISW SNGTLNYGKN QMGSLNFGST  420
QAQENIYHSY IQNKSMMAPT ATSNQHSLQP DTIEAATRAI TSDPNFQSVL QAALTSIIGG  480
VGIGVQGEGE KSGQNVKLED TFPVFSSFPS TSNANKCSSS FFNKSTAATT TTMNKQAPGS  540
NSLPFSSSRS KSTSPENSRD HVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	4e-62	WRKY family protein