PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976982.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Dof

Protein Properties

Length: 337aa MW: 36704.9 Da PI: 7.0716

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976982.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	40	97	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +alkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s XP_024976982.1 40 QALKCPRCESLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRS 97 789****************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MQDIHSIGSG GGGGGRLFGG GGGGDRRLRP HHHHQGHGPQ ALKCPRCESL NTKFCYYNNY 60 NLSQPRHFCK NCRRYWTKGG VLRNVPVGGG CRKTKRSKPK SNNNRSSETA VRKSSNSQNS 120 SSDSSSLTAN TTAANTTVTA NTTTTATVTA PVAEVLSGIN STNSAPTMLN FPESSTSFLN 180 ITQSSTPNPS FDPPLLDDPS AENNIFPEIG TFTSLITSST TQLPLGFNIS ADTSPFRLHH 240 TGHIVENSNS NQQQWIHTDH TIGDDLKVQE TSPLGFMGLQ HKTTDGGLGT EDWNNGTDQA 300 LFDLTGSVDQ SYWNQTQWVD HDHDHDHDHH HQLNYLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	22	GGGGRLFGGGG
2	13	23	GGGGRLFGGGG
3	14	24	GGGGRLFGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-34	Dof family protein