PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977043.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 237aa    MW: 25838.4 Da    PI: 6.5415
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-1081128454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE+ RRd++N++f eL ++l +    +  K +Ka+iL  Av+ + +L
  XP_024977043.1  81 SKACREKLRRDKLNDKFVELASILEPG---RPLKTDKAAILVDAVRMVTQL 128
                     5678**********************8...89**************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MVSPENTNWI YDYGLIDDIA VPVGNLLTPA CVSSWPMQAA LNGSASNPCV EPDGSLVDAD  60
GYKETGSKKR GRADPGSSTS SKACREKLRR DKLNDKFVEL ASILEPGRPL KTDKAAILVD  120
AVRMVTQLRT EAQKLKDSSS DLQEKIKELK SEKNELRDEK QRLKAEKEKL EQQVNSMNTQ  180
PSFMAPPPAA YPAAAGGQAM GNKLVPIISY PGMGMWQFMP PAAVDTSQDH MLHPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-99bHLH family protein