PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977070.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 493aa MW: 52414.4 Da PI: 5.8526

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.1e-08	186	231	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r++W+++Ed+ l av++ G g+W+ I + Rt+ q+ rw+ XP_024977070.1 186 RKPWSADEDKELFAAVQRCGEGNWANILKGDFkGDRTASQLSQRWN 231 789************************9842235999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MQSQSQNIDS SSMADKSTTQ KRGGSISEDD VALVLQRYKA STVLDLLGEV YRFQDVQDVK 60 IDWNALVKQT KTGITNPREY QMLWRHLAYC DPLIDELEDD AQPMVLIDSG SSSDSCLEKG 120 LTIEAPLTIN IPNNKLENPQ LGSSSYGINI TIPVSVPKQT LPTVSSAEGL DTNGYANSNL 180 PPRRKRKPWS ADEDKELFAA VQRCGEGNWA NILKGDFKGD RTASQLSQRW NIIKKRKSNS 240 IIKMGSQLSE VQLAARRALN LALDKPGADN SKAASSLGSN LSVQPTVAEP SSAGALPQNQ 300 SQPDSKRAIP RSQPFPTRPS AKPLTSGPDA VKAAAVAAGA RIATQSAAAA ILKAQLKSAI 360 HIKTTTSGNT RPSPATHMGS DYFRDRYSSM AANAPRANLG SSHANPNVGL AVQQVNPGGS 420 GPDVNIASET SDGTEVKPSG SASSMVEPVQ EDQVAVCGGP VVVQDNLGLK DEDLEEQPPP 480 VSGNPPNSNL ESE

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MQSQSQNIDS SSMADKSTTQ KRGGSISEDD VALVLQRYKA STVLDLLGEV YRFQDVQDVK  60
IDWNALVKQT KTGITNPREY QMLWRHLAYC DPLIDELEDD AQPMVLIDSG SSSDSCLEKG  120
LTIEAPLTIN IPNNKLENPQ LGSSSYGINI TIPVSVPKQT LPTVSSAEGL DTNGYANSNL  180
PPRRKRKPWS ADEDKELFAA VQRCGEGNWA NILKGDFKGD RTASQLSQRW NIIKKRKSNS  240
IIKMGSQLSE VQLAARRALN LALDKPGADN SKAASSLGSN LSVQPTVAEP SSAGALPQNQ  300
SQPDSKRAIP RSQPFPTRPS AKPLTSGPDA VKAAAVAAGA RIATQSAAAA ILKAQLKSAI  360
HIKTTTSGNT RPSPATHMGS DYFRDRYSSM AANAPRANLG SSHANPNVGL AVQQVNPGGS  420
GPDVNIASET SDGTEVKPSG SASSMVEPVQ EDQVAVCGGP VVVQDNLGLK DEDLEEQPPP  480
VSGNPPNSNL ESE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	188	PRRKRKP
2	228	237	QRWNIIKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-60	MYB_related family protein