PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977178.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 513aa MW: 54983.1 Da PI: 5.3254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	319	361	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_024977178.1 319 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 361 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MWMNDDDDDD ERDNNQVNRN EESHEINSIS AFKSILEVEE DNNNNWFMQH QNRHESTLSF 60 SQNNILLQPV DSSSSCSPTS ASVFQNLDPT HVHYFLPPKP TIASILNPIS NNPLDGTFDL 120 GCGTGFTGIL PGFCDMGSQT QNGVSNLSSD PQFSATHLLQ LAGNGFGSPA FPGFDDGSTG 180 TSLVLNRSKL LKPLDNFAST GAPPTLFQKR ASLRRNLSDI NSGDAGGGGG GSLGVLGEGM 240 NEKKRKSSGG GSWDDVDNLS LDGSGLNYDS DDFTVNTTGN FEENGIKISG GNSSNGNSTV 300 TAAGGGKGKK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE 360 LLQKINDLNH ELESTPSGSS LTPTAAAAAT TMAAAGFYPL TPTPTSLPSR IKEELCPSAI 420 PSPTGQPARV EVRQREGRAV NIHMFCSRRP GLLLSTMRAL DNLGLDIQQA VISCFNGFAL 480 DVFRAEQCKE GQDVHPDQVK AVLLESAGYH GVA

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MWMNDDDDDD ERDNNQVNRN EESHEINSIS AFKSILEVEE DNNNNWFMQH QNRHESTLSF  60
SQNNILLQPV DSSSSCSPTS ASVFQNLDPT HVHYFLPPKP TIASILNPIS NNPLDGTFDL  120
GCGTGFTGIL PGFCDMGSQT QNGVSNLSSD PQFSATHLLQ LAGNGFGSPA FPGFDDGSTG  180
TSLVLNRSKL LKPLDNFAST GAPPTLFQKR ASLRRNLSDI NSGDAGGGGG GSLGVLGEGM  240
NEKKRKSSGG GSWDDVDNLS LDGSGLNYDS DDFTVNTTGN FEENGIKISG GNSSNGNSTV  300
TAAGGGKGKK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE  360
LLQKINDLNH ELESTPSGSS LTPTAAAAAT TMAAAGFYPL TPTPTSLPSR IKEELCPSAI  420
PSPTGQPARV EVRQREGRAV NIHMFCSRRP GLLLSTMRAL DNLGLDIQQA VISCFNGFAL  480
DVFRAEQCKE GQDVHPDQVK AVLLESAGYH GVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	327	KKKGLPAKNLMAERRRRKK
2	321	328	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-122	bHLH family protein