PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977242.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 398aa MW: 43596 Da PI: 8.5018

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.3	2e-11	11	36	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_024977242.1 11 GEPDCSYYIRTGLCRFGATCRFNHPP 36 6899********************97 PP
2	zf-CCCH	39	1.3e-12	57	81	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_024977242.1 57 QPECQYYLKTGTCKFGATCKFHHPR 81 799********************96 PP
3	zf-CCCH	37	5.8e-12	104	127	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ XP_024977242.1 104 AECAYYLRTGQCKFGSTCKFHHPQ 127 79********************97 PP
4	zf-CCCH	38.1	2.7e-12	258	284	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_024977242.1 258 PGQPECQFYMKTGDCKFGAVCRFHHPR 284 5789*********************96 PP
5	zf-CCCH	40.3	5.2e-13	304	330	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_024977242.1 304 PGEPLCIFYSRYGICKFGPSCKFDHPM 330 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MDPGPYPVRE GEPDCSYYIR TGLCRFGATC RFNHPPNRKL AIATAKMRGE YPERAGQPEC 60 QYYLKTGTCK FGATCKFHHP RDKAGIAGRV SLNVLGYPLR TNEAECAYYL RTGQCKFGST 120 CKFHHPQPSN MMVSYRGSPV YPTVQSPTSP GQQSYPGGIT NWSLSRASFI SPRWQAPSNY 180 APVILPQGVV SVPGWGAYSG PLGSLSSSES QQQTAGNSQI YGTSRQSEAA NEAVQGTYSS 240 YRTGYYALPS ENVFPERPGQ PECQFYMKTG DCKFGAVCRF HHPRERMIPV PDCVLSPMGL 300 PLRPGEPLCI FYSRYGICKF GPSCKFDHPM GVFAYNFSAS TSADSPAVRR LLGSSSANGA 360 LNMSSEGLVE GDSVNPRQIS LPDRRHIPTN DDSIDTEG

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MDPGPYPVRE GEPDCSYYIR TGLCRFGATC RFNHPPNRKL AIATAKMRGE YPERAGQPEC  60
QYYLKTGTCK FGATCKFHHP RDKAGIAGRV SLNVLGYPLR TNEAECAYYL RTGQCKFGST  120
CKFHHPQPSN MMVSYRGSPV YPTVQSPTSP GQQSYPGGIT NWSLSRASFI SPRWQAPSNY  180
APVILPQGVV SVPGWGAYSG PLGSLSSSES QQQTAGNSQI YGTSRQSEAA NEAVQGTYSS  240
YRTGYYALPS ENVFPERPGQ PECQFYMKTG DCKFGAVCRF HHPRERMIPV PDCVLSPMGL  300
PLRPGEPLCI FYSRYGICKF GPSCKFDHPM GVFAYNFSAS TSADSPAVRR LLGSSSANGA  360
LNMSSEGLVE GDSVNPRQIS LPDRRHIPTN DDSIDTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-160	C3H family protein