PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977255.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 328aa MW: 36917.1 Da PI: 7.2787

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++ +G+g +W + +++ g++R++k+c++rw++yl XP_024977255.1 14 KGPWSPEEDRKLKEYIESHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	32.4	2.1e-10	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed+ + +++ G++ W+ a+ ++ gRt++++k++w++ XP_024977255.1 69 GEFSDDEDKVICTLFASIGSR-WSIMAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDRKLKEYIE SHGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDDEDKVIC TLFASIGSRW SIMAAQLPGR TDNDIKNYWN TKLKKKMMSS 120 LISIPEIRKP FHHLESFNSS TNYSYPSLSI FQNSNININA PLSSSSPPSS YLYSTNTSSH 180 HDHQTLSIPS SPTTAPADRH RLLRSQDHRY LGLGPMEGYQ AVKDSSTLVM FGGDQASCSS 240 NSDGSCHYEY GTVGVYDHNN MGNLQSDSYK EFGGNYEKEK GYYGDSSLDC SLEEIKQLIS 300 TNLCSSNIDN NLNFFVDETK EVEKVMYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	1e-70	MYB family protein