PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977329.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 221aa MW: 24712.3 Da PI: 8.0999

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.0002	22	70	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r + erE+ R+++N+ f eL l + Ka+iL ++++ +k+ XP_024977329.1 22 KRIHKAEREKMKREHLNELFLELAGALELT----EQNSGKASILGETTRVVKD 70 688899*********************996....4556677888888887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MGAEKSPTCL HPSKKNPGKV PKRIHKAERE KMKREHLNEL FLELAGALEL TEQNSGKASI 60 LGETTRVVKD MLDQIKSLKK ENAALLSESQ YVTVERNELQ DETCALQKQI SELKSVIKER 120 TVQKNLDLNA PAMESQEPQL PQYLPHDIIR LPPGNPLLNS VVVIPACHNV QIHTRPDSGL 180 IIGNKPVSNV SKPYPRYPTP SDSWPFQLLE KAGEDPHREG A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.2	6e-40	bHLH family protein