PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977330.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 406aa MW: 43120.6 Da PI: 8.2873

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.6	7.4e-41	78	194	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_024977330.1 78 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrsty 172 789******************************************************************99987777777777555556666667 PP TCP 89 .....................k 89 + XP_024977330.1 173 fnpnftlpqrrnlfpgiglssS 194 7777777776555555544320 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MDGGDDHFHH RPNFPFQLLE KKDDEASCSS SATGAYPSLA ISADTNINPI GRSNTSNLQI 60 TTTTATTSSA EPSSKKQPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD 120 GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS TYFNPNFTLP 180 QRRNLFPGIG LSSSENSSSN LLSFGSTMNL NQILQAKQEM RENPVELSET EESMGRKRRP 240 PAELDLSSQH QQQMGNYLMQ SSTGAMAASH PSIPANFWMV ANSNQHQVMN GDPIWTFPNV 300 NNSAAVYRGT VSSGLHFMNF PTPVALLPSQ QLGAGIGGNG GGNGGSGGGG SGGYNEAQLN 360 MLAGLNPYRP IFGPGGSEPP ASGSQSHHRG GGGDGGDRHD TTSHNS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MDGGDDHFHH RPNFPFQLLE KKDDEASCSS SATGAYPSLA ISADTNINPI GRSNTSNLQI  60
TTTTATTSSA EPSSKKQPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD  120
GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS TYFNPNFTLP  180
QRRNLFPGIG LSSSENSSSN LLSFGSTMNL NQILQAKQEM RENPVELSET EESMGRKRRP  240
PAELDLSSQH QQQMGNYLMQ SSTGAMAASH PSIPANFWMV ANSNQHQVMN GDPIWTFPNV  300
NNSAAVYRGT VSSGLHFMNF PTPVALLPSQ QLGAGIGGNG GGNGGSGGGG SGGYNEAQLN  360
MLAGLNPYRP IFGPGGSEPP ASGSQSHHRG GGGDGGDRHD TTSHNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	1e-56	TCP family protein