PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977404.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 89aa    MW: 10126.5 Da    PI: 9.2115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-0616561655
                    HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    +   +++L+ llP+  s+a+++++  + i ++++ YIksL+
  XP_024977404.1 16 LDRLLSKLQALLPPsTSSANKTRVPASKIIQETCYYIKSLR 56
                    667899********888**********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    
MSSQPRRPSR NKDDELDRLL SKLQALLPPS TSSANKTRVP ASKIIQETCY YIKSLRREGD  60
NLGERLSQIL DSMENNGVDV NILRDLLQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.13e-19bHLH family protein