PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977578.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 247aa MW: 28488.2 Da PI: 8.5663

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_024977578.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	85.4	1.2e-28	80	174	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++ ++s+++e+ kLk+++e+Lq+ qR+l GedL++L+lkeL+qLe+qL++ l++iRs +++ +l+ ++elq ke++ e+nkaL++klee XP_024977578.1 80 VSRSANDAEQSSYKEYMKLKAKYESLQQYQRQLFGEDLGPLNLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVKERMWLEANKALQNKLEE 174 45566777899*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SNMLKMLERY QNCTYSSMEV SRSANDAEQS SYKEYMKLKA KYESLQQYQR QLFGEDLGPL 120 NLKELEQLER QLDSTLRQIR SIRTQSMLDR LSELQVKERM WLEANKALQN KLEEFYAENQ 180 AGPSWAGGEN GHSYHQHQDQ HPQPQGFFQP LDCNSNLQIG YNTIGSSQIN ASTSGQNVNG 240 IVPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-101	MIKC_MADS family protein