PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977607.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 416aa MW: 45981 Da PI: 7.6019

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977607.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.1e-32	227	280	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_024977607.1 227 PRMRWTSTLHSRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 280 9****************************************************7 PP
2	Myb_DNA-binding	46.9	6.5e-15	228	279	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_024977607.1 228 RMRWTSTLHSRFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 279 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MPFDGISIEP QPSSNPLPDL SLQISPPDTS SVHTENTSQR DAYIDLSLPC SSRNLAPSLT 60 VRDQYHPQNV FHHHPNHNHH RIYNQPPNNF VSLLDASKCL KPIKGIPVYH NRQFPFLPNL 120 DGPREKEPKT MCLYPSSSSS SFPYFADGGN HMPFLNPMPR GSSSSGFSIP NCGGGGGIEA 180 RFSRLSSSYQ LHHHNYGGGP TSHEVSHGML RSKFLPKLPT KRSMRAPRMR WTSTLHSRFV 240 HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTDKPAAS SGQSDDGSGE 300 DDSSTMGNGK VGSFIDQRHP PDQQVFDHPN SSSATTTTTT LWSNSSSNGD AWSDANPIDL 360 GRPSSTFLSP WTASRHFAEE CDSLKLKSYL GFTVDQRNPS LEFTLGRPDW VQKEGD

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MPFDGISIEP QPSSNPLPDL SLQISPPDTS SVHTENTSQR DAYIDLSLPC SSRNLAPSLT  60
VRDQYHPQNV FHHHPNHNHH RIYNQPPNNF VSLLDASKCL KPIKGIPVYH NRQFPFLPNL  120
DGPREKEPKT MCLYPSSSSS SFPYFADGGN HMPFLNPMPR GSSSSGFSIP NCGGGGGIEA  180
RFSRLSSSYQ LHHHNYGGGP TSHEVSHGML RSKFLPKLPT KRSMRAPRMR WTSTLHSRFV  240
HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTDKPAAS SGQSDDGSGE  300
DDSSTMGNGK VGSFIDQRHP PDQQVFDHPN SSSATTTTTT LWSNSSSNGD AWSDANPIDL  360
GRPSSTFLSP WTASRHFAEE CDSLKLKSYL GFTVDQRNPS LEFTLGRPDW VQKEGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	2e-51	G2-like family protein