PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977633.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 726aa MW: 84432.4 Da PI: 7.9986

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30	1.7e-09	99	147	38	90
FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 g+++ +e++ r+++ +r+gC+a+lk++++k + +e++++++ HnHel+ XP_024977633.1 99 AGFDS-----SERRYRNTNLKRCGCNACLKIHLTKdGSCYEIYEFVEAHNHELF 147 33333.....45566999**************98889***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MDDHRVNWFD DNGNGKAKSV YEYIRNSNVE SEENDQTVHF GLDDITPLQP AAGYDISESS 60 EGSKYFLPIV DDELKPMMSA RYASKNDAEK LYRAYADKAG FDSSERRYRN TNLKRCGCNA 120 CLKIHLTKDG SCYEIYEFVE AHNHELFNIN DRRFSRKNRQ MKYTNFKNVL NSSSYKVGVR 180 RAHRIQMALN GGFEHIRVSE IDFKNFKRDA VACVGNKDAK MLINKLSNRR EIVPGYFFEY 240 KCNERELIAI FWADEVARIN YKEFGDVISF DGTFRTNKHA MIFVPFLAVD NHKASVVVGS 300 ALISGETIDN FTWVLNAFLK CHEKQPVFVI TDQCSAMKQA IPMVFTEXKH RLLVDIYKLV 360 WNIHIGPSEF ESRWHEMIDE YNMGGDPWFT EMYAIRHSWI PAFYKDTPMS RLMKTTSRSE 420 SSNSYINIYE SYWFDLVQFL NNYDVAIEKQ RYRQSVHEIV TRTTNPKFVT PLRLESNASS 480 IYSRNVSFDV QKEIKKAVWF YAIESVECRD HLKSFVISHK TKKSSDNISY LVNRNYSTDT 540 VECECNLFTR NGYLCRHAFK VLINDEVEFI PDRYVLLRWR RQLVPVQIQS ARVRYGEVDA 600 EKDKCIFDVY SKVDDIISIA RNDKTILSRL ERYLDRFMAD IEKEVPYEDP SQQRLDAIRD 660 HLGVSIPDEV DILPPSGIRN KGCGTGKRLV SVAEKMQNNS KKAKQKCATC GQRSGHDSRN 720 CLELIG

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MDDHRVNWFD DNGNGKAKSV YEYIRNSNVE SEENDQTVHF GLDDITPLQP AAGYDISESS  60
EGSKYFLPIV DDELKPMMSA RYASKNDAEK LYRAYADKAG FDSSERRYRN TNLKRCGCNA  120
CLKIHLTKDG SCYEIYEFVE AHNHELFNIN DRRFSRKNRQ MKYTNFKNVL NSSSYKVGVR  180
RAHRIQMALN GGFEHIRVSE IDFKNFKRDA VACVGNKDAK MLINKLSNRR EIVPGYFFEY  240
KCNERELIAI FWADEVARIN YKEFGDVISF DGTFRTNKHA MIFVPFLAVD NHKASVVVGS  300
ALISGETIDN FTWVLNAFLK CHEKQPVFVI TDQCSAMKQA IPMVFTEXKH RLLVDIYKLV  360
WNIHIGPSEF ESRWHEMIDE YNMGGDPWFT EMYAIRHSWI PAFYKDTPMS RLMKTTSRSE  420
SSNSYINIYE SYWFDLVQFL NNYDVAIEKQ RYRQSVHEIV TRTTNPKFVT PLRLESNASS  480
IYSRNVSFDV QKEIKKAVWF YAIESVECRD HLKSFVISHK TKKSSDNISY LVNRNYSTDT  540
VECECNLFTR NGYLCRHAFK VLINDEVEFI PDRYVLLRWR RQLVPVQIQS ARVRYGEVDA  600
EKDKCIFDVY SKVDDIISIA RNDKTILSRL ERYLDRFMAD IEKEVPYEDP SQQRLDAIRD  660
HLGVSIPDEV DILPPSGIRN KGCGTGKRLV SVAEKMQNNS KKAKQKCATC GQRSGHDSRN  720
CLELIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-52	FAR1 family protein