PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977637.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 396aa MW: 44617.8 Da PI: 4.4486

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.4	9.9e-15	51	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++ +gr++A+++d s+n k+ k+++lg ++ +e Aa+ ++ a++k++g XP_024977637.1 51 SKFRGVTRHRCTGRFEAHLWDkSSWNIakkKKgKQIYLGAYDDEEAAARTYDLAALKYWG 110 79*****************777755656447***********************98 PP
2	AP2	50.6	4.7e-16	153	203	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV +++ +grW+A+I + +g +++++lg+f t+eeAa+a++ a+ + XP_024977637.1 153 SKYRGVARHHHNGRWEARIGRV--DG-NRYIYLGTFATEEEAARAYDLAAILHR 203 89**99******9885..33.6*******************97665 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MKRKLSPSSS SSSPSSSSSS CIIEQPLTIP KIKNKKKPPT TSAETAVRRS SKFRGVTRHR 60 CTGRFEAHLW DKSSWNIAKK KKGKQIYLGA YDDEEAAART YDLAALKYWG PETTLNFPID 120 TYKNEMNEIE KMSKEEYIAS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVDGNRYI 180 YLGTFATEEE AARAYDLAAI LHRKENAVTN FDISIYSDYL ESLPTQQPDD SPQAEAISND 240 EVNDNNHDGE KYEQQLEIAE PQEIAEQLED VAEQLEDVAE QLEDVAEPHQ EIAEQLEEIA 300 EPVNPNLNFT SSVQDEEDPW SFCWDVCYDP FSFSPNSFDE YGEGMPLDFF YDDGFEANID 360 SIFSEQNFDK NGCVASPSSS SMSSASTVSS FSGPSV

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MKRKLSPSSS SSSPSSSSSS CIIEQPLTIP KIKNKKKPPT TSAETAVRRS SKFRGVTRHR  60
CTGRFEAHLW DKSSWNIAKK KKGKQIYLGA YDDEEAAART YDLAALKYWG PETTLNFPID  120
TYKNEMNEIE KMSKEEYIAS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVDGNRYI  180
YLGTFATEEE AARAYDLAAI LHRKENAVTN FDISIYSDYL ESLPTQQPDD SPQAEAISND  240
EVNDNNHDGE KYEQQLEIAE PQEIAEQLED VAEQLEDVAE QLEDVAEPHQ EIAEQLEEIA  300
EPVNPNLNFT SSVQDEEDPW SFCWDVCYDP FSFSPNSFDE YGEGMPLDFF YDDGFEANID  360
SIFSEQNFDK NGCVASPSSS SMSSASTVSS FSGPSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	4e-88	AP2 family protein