PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977644.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 612aa MW: 70987.7 Da PI: 8.8487

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977644.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2e-20	125	220	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+e+GF+vr s++k + ++g+it+r +vCskeg++ ++ + +++ r+++++r gC a+lk++ k + ++ev+k+ ++HnH XP_024977644.1 125 KMYRKYANEAGFDVRLSNKKIN-KKGRITSRFYVCSKEGRPPSKYFDsldvlpGDRRIRNSNVKRSGCGACLKIHFVKeRREYEVYKFIKQHNHM 218 68*************98887.6677**********9999889999899999**************999899***********9 PP FAR1 89 la 90 l+ XP_024977644.1 219 LF 220 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MDYMSFNETF SKDIVEESSV FDSMNDCEGF DDGGENANTA NNETIEDQCN YSMRNEDGCN 60 DGNETLNFIT DLIAREHKDV FFESDYRSDG MEETNDGSKC WFPNVDAEYK PKVGDGFETV 120 ESTEKMYRKY ANEAGFDVRL SNKKINKKGR ITSRFYVCSK EGRPPSKYFD SLDVLPGDRR 180 IRNSNVKRSG CGACLKIHFV KERREYEVYK FIKQHNHMLF NKEEMRFSRS KRQLHYADHK 240 NVFHGSSSKV GVTKSHRFRK AITGGVDCSG GTVRDHQNFK RDTAYFVGNK DAQMLLNLMS 300 NRRKVCPEFF FEYKCDDKEL HAMIFVPFVA IDNHKKSVVV GAALIHNESV VDYTWVLKAF 360 VKAHGHQPRF VITDQCASMK QAILIAFPES KHRLCMWHIT KKLKSKISNY LQHRTPFVSE 420 FNKLVWNVHL APDEFEMKWL NISWIPAYYK DYHMSGLMKT TSRSESINAF FNVYAYFWHD 480 LVIFHRSFDN AIESQRTTHG SLEVTTKSTV PRLVSPFKLE AHAAEVYTQT IFLEVQKELR 540 KAVWLCGWDG FTDVGETRVY TITHKNKTSK ITTKFSRTRL KTRMIAHVTV LFVTGFYVVM 600 LSRCANLGSP FI

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MDYMSFNETF SKDIVEESSV FDSMNDCEGF DDGGENANTA NNETIEDQCN YSMRNEDGCN  60
DGNETLNFIT DLIAREHKDV FFESDYRSDG MEETNDGSKC WFPNVDAEYK PKVGDGFETV  120
ESTEKMYRKY ANEAGFDVRL SNKKINKKGR ITSRFYVCSK EGRPPSKYFD SLDVLPGDRR  180
IRNSNVKRSG CGACLKIHFV KERREYEVYK FIKQHNHMLF NKEEMRFSRS KRQLHYADHK  240
NVFHGSSSKV GVTKSHRFRK AITGGVDCSG GTVRDHQNFK RDTAYFVGNK DAQMLLNLMS  300
NRRKVCPEFF FEYKCDDKEL HAMIFVPFVA IDNHKKSVVV GAALIHNESV VDYTWVLKAF  360
VKAHGHQPRF VITDQCASMK QAILIAFPES KHRLCMWHIT KKLKSKISNY LQHRTPFVSE  420
FNKLVWNVHL APDEFEMKWL NISWIPAYYK DYHMSGLMKT TSRSESINAF FNVYAYFWHD  480
LVIFHRSFDN AIESQRTTHG SLEVTTKSTV PRLVSPFKLE AHAAEVYTQT IFLEVQKELR  540
KAVWLCGWDG FTDVGETRVY TITHKNKTSK ITTKFSRTRL KTRMIAHVTV LFVTGFYVVM  600
LSRCANLGSP FI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-45	FAR1 family protein