PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977793.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 1241aa MW: 138713 Da PI: 6.6922

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.8e-06	1216	1239	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G Ck G++C++ H+ XP_024977793.1 1216 GQRVCK-FYESGRCKKGASCNYWHP 1239 6799.8899*********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1241 aa Download sequence
MCYTCTYSLC KGCIKKADYV CVRDKGFCTV CMKTIMLIEN DGQGKDEKAQ VDFDDKTSWE 60 YLFKVYWVYL KGKLSLTLDE LTQAKSPSTG ASTSSVTPST CVHNGDNNLK SNMLDIPLRN 120 LEASESKRRK TDEQIITPHK ETVSMRKLGT DESSSVVACK DWATKELLDF VAHMKNGEAS 180 VLSQFDVQEL MLEYIKRNNL RDPRKKSQII CDSRLKTLFG KPRVGHFEML KLLEYHFFIK 240 EDLPKNTINS IARQVDPDWN SDNMLTLGKD KKRKNNRKGE ERPPQNKLDE YAAIDVHNMN 300 LIYLRRKLME NLIEDSEAFH GKVVGSIVRI RISGSDQKHD MYRLVQVVGI SKADAPYKIG 360 DKSADDVLEV LNLDKKETVL IDTISNQDLS EDECRRLRQS IKCGLVKRFT VGEIQEKAVS 420 LQSVRLNDWM EAEILRLNNL RDRASEKGHK KGLREYVEKL QLLKTPEERE RRLREIPEVH 480 SDPKMNPDYE TDDTEEYFNK EHEHKKPKYS GVSRKNTNSL KKRAEFSNNI GRSWKNEQPE 540 SKATGRLNMA KDGHGSGSLV RPKNPVECNG STINNRNHRT IGSSPLVNPA SETATSYSMR 600 NTTTSNDSDM DKVWHYRDPS GKVQGPFCMI QLQKWSTTGY FPVDMRIWMN REDESLLLSD 660 VLKEQSQNSR LSENKTATDK VGNRIEGLTV RTANLLSTEK LPDDHGSSGQ SSVQNWSSNG 720 NILNRNVSNE STGQLNTLEL ASPTPVENDA DIKRVSSIFD ISDASLVDLP SPTPKKTSSH 780 EEEKVQNGGA KEQPILPEIL VQDARNFTSD QDVGGAQLLK TANEWSGYSP IQVKREEWNS 840 GGVSVSVSAP QAEGDHVATT TSNIEQIVHL PPWNGVRETI EFSTLAEESV SDLLAEVDAM 900 ESQNGFPSPT SRRNGFVEDL FNGSFEEFSP TPDQSARSDG FSSIQADIQL PYQTAATTTT 960 TTTAATDEHS EVTSQGNNGN VFDFVKSSPT LQPSFICPET KSENPPFKWP EMLPEAVSKD 1020 IRVGCHSSEL QPPLHDVNNS AKDQERESGQ PTTTKPNPSP ELVPQLSQRT ESEDRTDHIR 1080 SGGRMMVGGR KAGDGGGTEN EQDGSFIHLL PPPPPPSLAI GFDKVYPRRV GSEATLGNMN 1140 IFIRPSQETV TRGSNPHLNV GRGGNIGWDP HQRMYGGERH NNNSPRERSY TGRQPSFGGG 1200 SGGGGGYLRP PPPPKGQRVC KFYESGRCKK GASCNYWHPL P

Sequence ? help Back to Top

Protein Sequence Length: 1241 aa Download sequence

MCYTCTYSLC KGCIKKADYV CVRDKGFCTV CMKTIMLIEN DGQGKDEKAQ VDFDDKTSWE  60
YLFKVYWVYL KGKLSLTLDE LTQAKSPSTG ASTSSVTPST CVHNGDNNLK SNMLDIPLRN  120
LEASESKRRK TDEQIITPHK ETVSMRKLGT DESSSVVACK DWATKELLDF VAHMKNGEAS  180
VLSQFDVQEL MLEYIKRNNL RDPRKKSQII CDSRLKTLFG KPRVGHFEML KLLEYHFFIK  240
EDLPKNTINS IARQVDPDWN SDNMLTLGKD KKRKNNRKGE ERPPQNKLDE YAAIDVHNMN  300
LIYLRRKLME NLIEDSEAFH GKVVGSIVRI RISGSDQKHD MYRLVQVVGI SKADAPYKIG  360
DKSADDVLEV LNLDKKETVL IDTISNQDLS EDECRRLRQS IKCGLVKRFT VGEIQEKAVS  420
LQSVRLNDWM EAEILRLNNL RDRASEKGHK KGLREYVEKL QLLKTPEERE RRLREIPEVH  480
SDPKMNPDYE TDDTEEYFNK EHEHKKPKYS GVSRKNTNSL KKRAEFSNNI GRSWKNEQPE  540
SKATGRLNMA KDGHGSGSLV RPKNPVECNG STINNRNHRT IGSSPLVNPA SETATSYSMR  600
NTTTSNDSDM DKVWHYRDPS GKVQGPFCMI QLQKWSTTGY FPVDMRIWMN REDESLLLSD  660
VLKEQSQNSR LSENKTATDK VGNRIEGLTV RTANLLSTEK LPDDHGSSGQ SSVQNWSSNG  720
NILNRNVSNE STGQLNTLEL ASPTPVENDA DIKRVSSIFD ISDASLVDLP SPTPKKTSSH  780
EEEKVQNGGA KEQPILPEIL VQDARNFTSD QDVGGAQLLK TANEWSGYSP IQVKREEWNS  840
GGVSVSVSAP QAEGDHVATT TSNIEQIVHL PPWNGVRETI EFSTLAEESV SDLLAEVDAM  900
ESQNGFPSPT SRRNGFVEDL FNGSFEEFSP TPDQSARSDG FSSIQADIQL PYQTAATTTT  960
TTTAATDEHS EVTSQGNNGN VFDFVKSSPT LQPSFICPET KSENPPFKWP EMLPEAVSKD  1020
IRVGCHSSEL QPPLHDVNNS AKDQERESGQ PTTTKPNPSP ELVPQLSQRT ESEDRTDHIR  1080
SGGRMMVGGR KAGDGGGTEN EQDGSFIHLL PPPPPPSLAI GFDKVYPRRV GSEATLGNMN  1140
IFIRPSQETV TRGSNPHLNV GRGGNIGWDP HQRMYGGERH NNNSPRERSY TGRQPSFGGG  1200
SGGGGGYLRP PPPPKGQRVC KFYESGRCKK GASCNYWHPL P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	1e-166	C3H family protein