PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977794.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 1206aa MW: 134820 Da PI: 6.6627

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.7e-06	1181	1204	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G Ck G++C++ H+ XP_024977794.1 1181 GQRVCK-FYESGRCKKGASCNYWHP 1204 6799.8899*********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1206 aa Download sequence
MRHFFDPKLN GIAAQVDFDD KTSWEYLFKV YWVYLKGKLS LTLDELTQAK SPSTGASTSS 60 VTPSTCVHNG DNNLKSNMLD IPLRNLEASE SKRRKTDEQI ITPHKETVSM RKLGTDESSS 120 VVACKDWATK ELLDFVAHMK NGEASVLSQF DVQELMLEYI KRNNLRDPRK KSQIICDSRL 180 KTLFGKPRVG HFEMLKLLEY HFFIKEDLPK NTINSIARQV DPDWNSDNML TLGKDKKRKN 240 NRKGEERPPQ NKLDEYAAID VHNMNLIYLR RKLMENLIED SEAFHGKVVG SIVRIRISGS 300 DQKHDMYRLV QVVGISKADA PYKIGDKSAD DVLEVLNLDK KETVLIDTIS NQDLSEDECR 360 RLRQSIKCGL VKRFTVGEIQ EKAVSLQSVR LNDWMEAEIL RLNNLRDRAS EKGHKKGLRE 420 YVEKLQLLKT PEERERRLRE IPEVHSDPKM NPDYETDDTE EYFNKEHEHK KPKYSGVSRK 480 NTNSLKKRAE FSNNIGRSWK NEQPESKATG RLNMAKDGHG SGSLVRPKNP VECNGSTINN 540 RNHRTIGSSP LVNPASETAT SYSMRNTTTS NDSDMDKVWH YRDPSGKVQG PFCMIQLQKW 600 STTGYFPVDM RIWMNREDES LLLSDVLKEQ SQNSRLSENK TATDKVGNRI EGLTVRTANL 660 LSTEKLPDDH GSSGQSSVQN WSSNGNILNR NVSNESTGQL NTLELASPTP VENDADIKRV 720 SSIFDISDAS LVDLPSPTPK KTSSHEEEKV QNGGAKEQPI LPEILVQDAR NFTSDQDVGG 780 AQLLKTANEW SGYSPIQVKR EEWNSGGVSV SVSAPQAEGD HVATTTSNIE QIVHLPPWNG 840 VRETIEFSTL AEESVSDLLA EVDAMESQNG FPSPTSRRNG FVEDLFNGSF EEFSPTPDQS 900 ARSDGFSSIQ ADIQLPYQTA ATTTTTTTAA TDEHSEVTSQ GNNGNVFDFV KSSPTLQPSF 960 ICPETKSENP PFKWPEMLPE AVSKDIRVGC HSSELQPPLH DVNNSAKDQE RESGQPTTTK 1020 PNPSPELVPQ LSQRTESEDR TDHIRSGGRM MVGGRKAGDG GGTENEQDGS FIHLLPPPPP 1080 PSLAIGFDKV YPRRVGSEAT LGNMNIFIRP SQETVTRGSN PHLNVGRGGN IGWDPHQRMY 1140 GGERHNNNSP RERSYTGRQP SFGGGSGGGG GYLRPPPPPK GQRVCKFYES GRCKKGASCN 1200 YWHPLP

Sequence ? help Back to Top

Protein Sequence Length: 1206 aa Download sequence

MRHFFDPKLN GIAAQVDFDD KTSWEYLFKV YWVYLKGKLS LTLDELTQAK SPSTGASTSS  60
VTPSTCVHNG DNNLKSNMLD IPLRNLEASE SKRRKTDEQI ITPHKETVSM RKLGTDESSS  120
VVACKDWATK ELLDFVAHMK NGEASVLSQF DVQELMLEYI KRNNLRDPRK KSQIICDSRL  180
KTLFGKPRVG HFEMLKLLEY HFFIKEDLPK NTINSIARQV DPDWNSDNML TLGKDKKRKN  240
NRKGEERPPQ NKLDEYAAID VHNMNLIYLR RKLMENLIED SEAFHGKVVG SIVRIRISGS  300
DQKHDMYRLV QVVGISKADA PYKIGDKSAD DVLEVLNLDK KETVLIDTIS NQDLSEDECR  360
RLRQSIKCGL VKRFTVGEIQ EKAVSLQSVR LNDWMEAEIL RLNNLRDRAS EKGHKKGLRE  420
YVEKLQLLKT PEERERRLRE IPEVHSDPKM NPDYETDDTE EYFNKEHEHK KPKYSGVSRK  480
NTNSLKKRAE FSNNIGRSWK NEQPESKATG RLNMAKDGHG SGSLVRPKNP VECNGSTINN  540
RNHRTIGSSP LVNPASETAT SYSMRNTTTS NDSDMDKVWH YRDPSGKVQG PFCMIQLQKW  600
STTGYFPVDM RIWMNREDES LLLSDVLKEQ SQNSRLSENK TATDKVGNRI EGLTVRTANL  660
LSTEKLPDDH GSSGQSSVQN WSSNGNILNR NVSNESTGQL NTLELASPTP VENDADIKRV  720
SSIFDISDAS LVDLPSPTPK KTSSHEEEKV QNGGAKEQPI LPEILVQDAR NFTSDQDVGG  780
AQLLKTANEW SGYSPIQVKR EEWNSGGVSV SVSAPQAEGD HVATTTSNIE QIVHLPPWNG  840
VRETIEFSTL AEESVSDLLA EVDAMESQNG FPSPTSRRNG FVEDLFNGSF EEFSPTPDQS  900
ARSDGFSSIQ ADIQLPYQTA ATTTTTTTAA TDEHSEVTSQ GNNGNVFDFV KSSPTLQPSF  960
ICPETKSENP PFKWPEMLPE AVSKDIRVGC HSSELQPPLH DVNNSAKDQE RESGQPTTTK  1020
PNPSPELVPQ LSQRTESEDR TDHIRSGGRM MVGGRKAGDG GGTENEQDGS FIHLLPPPPP  1080
PSLAIGFDKV YPRRVGSEAT LGNMNIFIRP SQETVTRGSN PHLNVGRGGN IGWDPHQRMY  1140
GGERHNNNSP RERSYTGRQP SFGGGSGGGG GYLRPPPPPK GQRVCKFYES GRCKKGASCN  1200
YWHPLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	1e-146	C3H family protein