PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977795.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 1129aa MW: 126223 Da PI: 6.6131

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.4e-06	1104	1127	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G Ck G++C++ H+ XP_024977795.1 1104 GQRVCK-FYESGRCKKGASCNYWHP 1127 6799.8899*********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1129 aa Download sequence
MLDIPLRNLE ASESKRRKTD EQIITPHKET VSMRKLGTDE SSSVVACKDW ATKELLDFVA 60 HMKNGEASVL SQFDVQELML EYIKRNNLRD PRKKSQIICD SRLKTLFGKP RVGHFEMLKL 120 LEYHFFIKED LPKNTINSIA RQVDPDWNSD NMLTLGKDKK RKNNRKGEER PPQNKLDEYA 180 AIDVHNMNLI YLRRKLMENL IEDSEAFHGK VVGSIVRIRI SGSDQKHDMY RLVQVVGISK 240 ADAPYKIGDK SADDVLEVLN LDKKETVLID TISNQDLSED ECRRLRQSIK CGLVKRFTVG 300 EIQEKAVSLQ SVRLNDWMEA EILRLNNLRD RASEKGHKKG LREYVEKLQL LKTPEERERR 360 LREIPEVHSD PKMNPDYETD DTEEYFNKEH EHKKPKYSGV SRKNTNSLKK RAEFSNNIGR 420 SWKNEQPESK ATGRLNMAKD GHGSGSLVRP KNPVECNGST INNRNHRTIG SSPLVNPASE 480 TATSYSMRNT TTSNDSDMDK VWHYRDPSGK VQGPFCMIQL QKWSTTGYFP VDMRIWMNRE 540 DESLLLSDVL KEQSQNSRLS ENKTATDKVG NRIEGLTVRT ANLLSTEKLP DDHGSSGQSS 600 VQNWSSNGNI LNRNVSNEST GQLNTLELAS PTPVENDADI KRVSSIFDIS DASLVDLPSP 660 TPKKTSSHEE EKVQNGGAKE QPILPEILVQ DARNFTSDQD VGGAQLLKTA NEWSGYSPIQ 720 VKREEWNSGG VSVSVSAPQA EGDHVATTTS NIEQIVHLPP WNGVRETIEF STLAEESVSD 780 LLAEVDAMES QNGFPSPTSR RNGFVEDLFN GSFEEFSPTP DQSARSDGFS SIQADIQLPY 840 QTAATTTTTT TAATDEHSEV TSQGNNGNVF DFVKSSPTLQ PSFICPETKS ENPPFKWPEM 900 LPEAVSKDIR VGCHSSELQP PLHDVNNSAK DQERESGQPT TTKPNPSPEL VPQLSQRTES 960 EDRTDHIRSG GRMMVGGRKA GDGGGTENEQ DGSFIHLLPP PPPPSLAIGF DKVYPRRVGS 1020 EATLGNMNIF IRPSQETVTR GSNPHLNVGR GGNIGWDPHQ RMYGGERHNN NSPRERSYTG 1080 RQPSFGGGSG GGGGYLRPPP PPKGQRVCKF YESGRCKKGA SCNYWHPLP

Sequence ? help Back to Top

Protein Sequence Length: 1129 aa Download sequence

MLDIPLRNLE ASESKRRKTD EQIITPHKET VSMRKLGTDE SSSVVACKDW ATKELLDFVA  60
HMKNGEASVL SQFDVQELML EYIKRNNLRD PRKKSQIICD SRLKTLFGKP RVGHFEMLKL  120
LEYHFFIKED LPKNTINSIA RQVDPDWNSD NMLTLGKDKK RKNNRKGEER PPQNKLDEYA  180
AIDVHNMNLI YLRRKLMENL IEDSEAFHGK VVGSIVRIRI SGSDQKHDMY RLVQVVGISK  240
ADAPYKIGDK SADDVLEVLN LDKKETVLID TISNQDLSED ECRRLRQSIK CGLVKRFTVG  300
EIQEKAVSLQ SVRLNDWMEA EILRLNNLRD RASEKGHKKG LREYVEKLQL LKTPEERERR  360
LREIPEVHSD PKMNPDYETD DTEEYFNKEH EHKKPKYSGV SRKNTNSLKK RAEFSNNIGR  420
SWKNEQPESK ATGRLNMAKD GHGSGSLVRP KNPVECNGST INNRNHRTIG SSPLVNPASE  480
TATSYSMRNT TTSNDSDMDK VWHYRDPSGK VQGPFCMIQL QKWSTTGYFP VDMRIWMNRE  540
DESLLLSDVL KEQSQNSRLS ENKTATDKVG NRIEGLTVRT ANLLSTEKLP DDHGSSGQSS  600
VQNWSSNGNI LNRNVSNEST GQLNTLELAS PTPVENDADI KRVSSIFDIS DASLVDLPSP  660
TPKKTSSHEE EKVQNGGAKE QPILPEILVQ DARNFTSDQD VGGAQLLKTA NEWSGYSPIQ  720
VKREEWNSGG VSVSVSAPQA EGDHVATTTS NIEQIVHLPP WNGVRETIEF STLAEESVSD  780
LLAEVDAMES QNGFPSPTSR RNGFVEDLFN GSFEEFSPTP DQSARSDGFS SIQADIQLPY  840
QTAATTTTTT TAATDEHSEV TSQGNNGNVF DFVKSSPTLQ PSFICPETKS ENPPFKWPEM  900
LPEAVSKDIR VGCHSSELQP PLHDVNNSAK DQERESGQPT TTKPNPSPEL VPQLSQRTES  960
EDRTDHIRSG GRMMVGGRKA GDGGGTENEQ DGSFIHLLPP PPPPSLAIGF DKVYPRRVGS  1020
EATLGNMNIF IRPSQETVTR GSNPHLNVGR GGNIGWDPHQ RMYGGERHNN NSPRERSYTG  1080
RQPSFGGGSG GGGGYLRPPP PPKGQRVCKF YESGRCKKGA SCNYWHPLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	1e-130	C3H family protein