PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977910.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 178aa    MW: 20337.9 Da    PI: 9.2278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-17850145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++W++eEd  l+  +k+ G++ W+ Iar+m+ gR+++ +k++w+
   XP_024977910.1  8 KDAWSEEEDRVLIAIHKEVGNK-WSEIARRMP-GRSENTIKNHWN 50
                     689*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MLTKYLQKDA WSEEEDRVLI AIHKEVGNKW SEIARRMPGR SENTIKNHWN ATKRRQLSSR  60
KRGKPKYQSL LQEYIRSVSS SSSSSVNQIN IKENNVKKTQ MVSAPITSLQ TNFSYADVNG  120
SSSSSLEDYS LGAMMGYIPG GSMLHESSLE FDLGPFHLSS QLEFDLKKEM DFLEMLYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-30MYB family protein