PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977911.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 148aa    MW: 17329.8 Da    PI: 10.579
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.2e-1958104148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W  eEd ll ++vkq+G   W++Ia++++ gR +kqc++rwq++l
   XP_024977911.1  58 KGQWNSEEDRLLMQLVKQYGDSKWSRIAEKLP-GRIAKQCRDRWQNHL 104
                      799*****************************.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MDQQFSFQMF GSAFANSPRE FSCLSSIEND RHKKPNGRKN NNARKKSGKD WRKTLIIKGQ  60
WNSEEDRLLM QLVKQYGDSK WSRIAEKLPG RIAKQCRDRW QNHLRPDITV SLPTFFLNVS  120
TYIPIVPYPT SRWDILDSFG LVYVSNKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-24MYB family protein