PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977914.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 308aa    MW: 34396.4 Da    PI: 8.4547
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.91.8e-3053166289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssa 70 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl  ak++i+el+ +                          +    
  XP_024977914.1  53 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDVAKHEIDELPPLqmpsgnygqglqaminlashpgmistP---- 143
                     689*************************************************************555555555555555554444332221.... PP

             TCP  71 seceaesssssasnsssg........k 89 
                      +  ++s++ ++++   +        k
  XP_024977914.1 144 -QIPENSERLKTNT---NwedywnpdK 166
                     .1122222222222...0222444431 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MNISNLRESS DVTRKQEGTN SKDGSKISPK PNLTTSSWTK LKDPRIVRVS RAFGGKDRHS  60
KVCTVRGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLLDVAKHEI DELPPLQMPS  120
GNYGQGLQAM INLASHPGMI STPQIPENSE RLKTNTNWED YWNPDKSKEK DDYPGSKNDH  180
DHGAPILLQS SNSSMFTNGV QTGSILKWNP SNLSLSQFGS YGSMATHQHE DTLNFNINVS  240
GSQLLAYPPP SHDHHKQLNL EMLSPSSSSS HNPLSSSLYT INQGMRPFHL SMNPKMFPSQ  300
EDEPDKGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.15e-48TCP family protein