PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977961.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bZIP

Protein Properties

Length: 474aa MW: 50774.1 Da PI: 6.42

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977961.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.8	3.6e-16	257	313	3	59
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L eN++L k+l +++++ + XP_024977961.1 257 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 313 579*****************************************9999999988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MDRMFSVDDI AGHFWSPSPA AAGAADEDES SSSSSASKNK STPAMMNRSM SEWAFQRFLQ 60 EASAPPESSS SRPNDVVEIK DQDEVQDKNQ PIATTTATLK NNESGRTTGS ASGGGAAAAA 120 TTSFGASVVG GPPNVPIDSE EYQDYLKNRL NLACAAVALT RASSAKPQDF AALLDNGSQA 180 SNTSQLGYQA PAKVSGFDLK GPGKDGGGPI GIPSLQGIQK KPAIPVKSAT SGSSRELSDD 240 DELDGDTETT QNMDPTDAKR VRRMLSNRES ARRSRRRKQA HLTELETQVS QLRVENSSLL 300 KRLTDISQKY NEAAVDNRVL KADVETMRAK VKMAEESVKR ITGFNPMVQA MSDLSTMGPM 360 PSYSCSPSDA SADAAVSQDD MKQQHFYQGQ PPPPPTTTNH HIPATRPPPQ NMVNLPPVEN 420 VQQHNPVMSE VGNQKMNRTA SMQRVASLEH LQKRFRGDVG SSCGTTTQGS TGDR

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MDRMFSVDDI AGHFWSPSPA AAGAADEDES SSSSSASKNK STPAMMNRSM SEWAFQRFLQ  60
EASAPPESSS SRPNDVVEIK DQDEVQDKNQ PIATTTATLK NNESGRTTGS ASGGGAAAAA  120
TTSFGASVVG GPPNVPIDSE EYQDYLKNRL NLACAAVALT RASSAKPQDF AALLDNGSQA  180
SNTSQLGYQA PAKVSGFDLK GPGKDGGGPI GIPSLQGIQK KPAIPVKSAT SGSSRELSDD  240
DELDGDTETT QNMDPTDAKR VRRMLSNRES ARRSRRRKQA HLTELETQVS QLRVENSSLL  300
KRLTDISQKY NEAAVDNRVL KADVETMRAK VKMAEESVKR ITGFNPMVQA MSDLSTMGPM  360
PSYSCSPSDA SADAAVSQDD MKQQHFYQGQ PPPPPTTTNH HIPATRPPPQ NMVNLPPVEN  420
VQQHNPVMSE VGNQKMNRTA SMQRVASLEH LQKRFRGDVG SSCGTTTQGS TGDR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	279	RRSRRRKQ
2	274	279	SRRRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	3e-63	bZIP family protein