PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977995.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 363aa    MW: 40222.8 Da    PI: 4.4789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-194191155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  XP_024977995.1 41 KKFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91
                    589*******.7*********33....35**********************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MSYRWSPSAY FDHLEGNICW DGSASETVVT AVHGGPRKAR KKFVGVRQRP SGRWVAEIKD  60
TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP SSQPFSTAPA LPSKITNLLI  120
RRLEARNNSL AATTSSQNPS LLTANMKQPE EFQDGTAEFS DTHFMDDFLN DLDEYLPAND  180
SMIFTDSGTS SSEADMAVHV DRCDYHPTDS SSTGDTIGGE VEDEEGMDFK FVDELGSACS  240
FSPFEIAQEI ALESGEEEEP LTISEAMKRM KYERKFSASL YAFHGIPECL KLKLGPRGGL  300
KARELSKTQG TDRPVKQGKK DTEECVVVEY VATEMATISS SNDVIYGELS LWSSLDLPTI  360
CYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-23ERF family protein