PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977997.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 259aa    MW: 30207.9 Da    PI: 6.9366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.5e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l   +   G  +W+ +++  g+ R++k+c++rw +yl
   XP_024977997.1 14 RGPWTMEEDRKLMSFIVNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding52.61e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++
   XP_024977997.1  67 RGTLSEAEEDQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      678899****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MGRQPCCDRA GLKRGPWTME EDRKLMSFIV NNGIQCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGTL SEAEEDQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG  120
VDPKTHKHID EEKKQDSATE NDQYNIIYEA TMTNGNTQVD IKKTNEHRFE NDTNSQNHHT  180
MMWGNFDMDS WTNTNQEKST SISKSDTYSL SYEDSVSINP NFSIEGDYSL QEWVDGVDSL  240
LLWDCFKQQE DTFLVLGNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.17e-82MYB family protein