PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978050.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 301aa MW: 33674 Da PI: 7.4206

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.6	1.3e-10	70	91	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ff+rtGtCk+G +C F+H+ XP_024978050.1 70 DCSFFLRTGTCKFGTTCIFNHP 91 7********************9 PP
2	zf-CCCH	23.7	8.2e-08	119	140	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+f++ G+CkyGd CkF+H++ XP_024978050.1 119 PCKFYLS-GHCKYGDFCKFNHCK 140 7996666.*************95 PP
3	zf-CCCH	32.6	1.3e-10	162	184	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f++rtG C yG++C+F+H+ XP_024978050.1 162 KNCAFYMRTGMCGYGESCRFHHP 184 68********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MATSGDDGIK KKFFLDLKCL FSQIPEVDTV LKSNQSDTYS DESKVVLLDG DDDGFRNSNL 60 LHPIRPNAKD CSFFLRTGTC KFGTTCIFNH PVLSENSVDL GKSNENGVES SYRNSCPIPC 120 KFYLSGHCKY GDFCKFNHCK SEAEKSTGQL NVYGFPKRLG KKNCAFYMRT GMCGYGESCR 180 FHHPDPFFIM PELYSSVVTG ESMDDHKETS EITLHFSEST PSHLSRPLIT PKSLAYVHQN 240 FVLSGNQGKK VCWNYERVGL CKFGHACAYD HPNKHSPKDG STSEFPSGEA YPYNILPKGC 300 C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	4e-34	C3H family protein