PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978155.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 80aa    MW: 9096.14 Da    PI: 8.456
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-081461347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+   +l+  a + +  +   +W +Iar +g g++++++k ++  +
   XP_024978155.1 14 SWTAKQNKLFETALAVYDRDsadRWQLIARAVGGGKSAEEVKRHYELL 61
                     7*****************99*************************765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MASNSISYSS TTCSWTAKQN KLFETALAVY DRDSADRWQL IARAVGGGKS AEEVKRHYEL  60
LLEDVRHIES GYIPSPNYRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-27MYB_related family protein