PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978159.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 350aa MW: 39224.4 Da PI: 7.6576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_024978159.1 14 KGPWAPEEDATLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.6	1e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_024978159.1 69 GGFSEEEDRIICSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGRAPCCDKA NVKKGPWAPE EDATLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDRIIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK 120 QRKEQISRRK GELLMKKGRS PSEIPSSIIV SGNDNNCQDP YWPELPVLPP VPYSNQEPCF 180 VNGHASIRKL LIKLGGRFSC DDNGDQSVNM VSHFPIDLPA SLHDDQKFIA SSTPVSSSSS 240 MLLNSQHDIL PIQEGRSGCF PSVFEEMYHN PQKLDGLEFL YGEMCEINTS GSSSVITCRD 300 SMDWGEMSSL ISTTTTTSNV MNSSNFRRSI QQGVELQDCA YDDNHHNRVH

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGRAPCCDKA NVKKGPWAPE EDATLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QRKEQISRRK GELLMKKGRS PSEIPSSIIV SGNDNNCQDP YWPELPVLPP VPYSNQEPCF  180
VNGHASIRKL LIKLGGRFSC DDNGDQSVNM VSHFPIDLPA SLHDDQKFIA SSTPVSSSSS  240
MLLNSQHDIL PIQEGRSGCF PSVFEEMYHN PQKLDGLEFL YGEMCEINTS GSSSVITCRD  300
SMDWGEMSSL ISTTTTTSNV MNSSNFRRSI QQGVELQDCA YDDNHHNRVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	1e-76	MYB family protein