PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978218.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 211aa MW: 23663.8 Da PI: 9.2554

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00016	29	67	2	44
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 + + erE+ Rd++N+ f eL + l +++ ++s+ K++ L XP_024978218.1 29 KIHKAEREKLKRDHMNELFLELTKALEPST-QNSG---KSSAL 67 667889********************9962.3333...33344 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MDENVNVAKK KSVGRSSFSK KDGTKVPRKI HKAEREKLKR DHMNELFLEL TKALEPSTQN 60 SGKSSALTDT IRILRDLIAQ VDSLKKENAV LLEESRYVAV EKNELKEENS AIEAQIKKLQ 120 SQIADRVHYP SSYLECNPIA LQPELQSSIQ AAAPGPVVGP VYVVPLQNDP KLYQEMVTKQ 180 HGTNVSKPHA RYPSASDSWS FNILSEQQRA D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.2	1e-40	bHLH family protein