PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978219.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 487aa MW: 55480.5 Da PI: 5.9626

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.0003	2	17	5	20
TTTEEESSHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHi 20 C+ksFs++++L +H XP_024978219.1 2 VCDKSFSSSYMLLNHE 17 5**************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MVCDKSFSSS YMLLNHEEVG VVDLVHMLRS NDIENRKFVD CPKGTTEDKF RRRWLISMSV 60 LAQKILKSIA GPLAATGSAI EYWLNLVACN RNLGGLISNF VRGELIRPEK TSATFLSFTG 120 NLDKRVELDK SIVECGDRDR YNSFLSIMAA KASYENHAYL QYTVTDLWKM EFMGSFDFQN 180 DYQGKPTTQA FMFRDKKDDS DMIIVAFRGT ETFDADAWSS DVDLSWYELP GIGKVHGGFM 240 KALGLQNSHG WPTKPTSQTD NQELFAYYAI RDMLKEALKA NKNTKCIISG HSLGGALAIL 300 FPAVLMLHTE KDVLDMIEGV YTFGQPRVGD EEFGKFMNEK MKEHKVKYYR TVYSNDMVPR 360 LPYDDSTMMF KHFGTCLYFD SFYNGKIVEE EPNKNYFSLL SAIPKMINAA WEIIRSFVIP 420 YTKGADYSEG GLLKMYRIIG LIVAGIPAHG PQDYVNAVRL ASSELYKDHE MMNNEETHIM 480 IEDETLK

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MVCDKSFSSS YMLLNHEEVG VVDLVHMLRS NDIENRKFVD CPKGTTEDKF RRRWLISMSV  60
LAQKILKSIA GPLAATGSAI EYWLNLVACN RNLGGLISNF VRGELIRPEK TSATFLSFTG  120
NLDKRVELDK SIVECGDRDR YNSFLSIMAA KASYENHAYL QYTVTDLWKM EFMGSFDFQN  180
DYQGKPTTQA FMFRDKKDDS DMIIVAFRGT ETFDADAWSS DVDLSWYELP GIGKVHGGFM  240
KALGLQNSHG WPTKPTSQTD NQELFAYYAI RDMLKEALKA NKNTKCIISG HSLGGALAIL  300
FPAVLMLHTE KDVLDMIEGV YTFGQPRVGD EEFGKFMNEK MKEHKVKYYR TVYSNDMVPR  360
LPYDDSTMMF KHFGTCLYFD SFYNGKIVEE EPNKNYFSLL SAIPKMINAA WEIIRSFVIP  420
YTKGADYSEG GLLKMYRIIG LIVAGIPAHG PQDYVNAVRL ASSELYKDHE MMNNEETHIM  480
IEDETLK