PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978236.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family AP2
Protein Properties Length: 486aa    MW: 53416.9 Da    PI: 7.7505
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-17165214155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_024978236.1 165 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 214
                     78*******************......55************************997 PP
2AP244.92.9e-14257307155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k++g
  XP_024978236.1 257 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKYNG 307
                     89********.7******5553..2.26**********99************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MWDLNGSPDL RKDQEGSNAC SSPVEVDEEP NSKGKRVGSV SNSSSSVVVM EEDDASDEDD  60
SERMTSRKRL FGFSMDGDPP PVTHQFFPID DPQVGPTTSL AVGISPATAF PAAHWVGVQF  120
CHQSPGPISG ATAASSVGGF LGKAAVPEVP QPLKKSRRGP RSRSSQYRGV TFYRRTGRWE  180
SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGIEADIN FSLQDYEDDL KQMSNLTKEE  240
FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EVEAARAYDK  300
AAIKYNGKDA VTNFDPKIYE KESNVTECSN NDNHASSYHN LDLSLGHNSA PNKQSNRDLG  360
FRPGAFGVGR YNETETLQLI SQTHLQSAGS SEGRSNESHG YGHLTRPGDP SMFHMLRPPP  420
LNSPNHQVEQ WSNGNGNGNG GLLYANSGAA SSGFPQQRFN MRQPPAPPHA HQTWQLHKNG  480
FTTTLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.11e-119AP2 family protein